The IGRINS_transit data reduction pipeline takes high-resolution observations of transiting exoplanets with Gemini-S/IGRINS and produces cross-correlation detections of molecules in the exoplanet's atmosphere. IGRINS_transit removes low signal-to-noise orders, performs a secondary wavelength calibration, and uses a singular value decomposition (SVD) to separate out the signature of the transiting planet from the host star and telluric contamination.